varTestnlme: an R package for variance components testing in linear and nonlinear mixed-effects models. Baey, Kuhn (2020). arxiv
Asymptotic distribution of likelihood ratio test statistics for variance components in nonlinear mixed effects models. Baey, Cournède, Kuhn. Computational Statistics and Data Analysis, 135:107-122, 2019 [journal] (arXiv version: arXiv).
Mixed-effects estimation in dynamic models of plant growth for the assessment of inter-individual variability. Baey, Mathieu, Jullien,Trevezas, and Cournède. Journal of Agricultural, Biological and Environmental Statistics, 23(2):208-232, 2018. [journal]
A model to account for data dependency when estimating floral cover in different land use types over a season. Baey, Sahlin, Clough, Smith. Environmental and Ecological Statistics, 24(4):505-527, 2017. [journal]
Predicting pollinator capital and pollination service responses to enhancing floral and nesting resources. Haussler, Sahlin, Baey, Smith and Clough. Ecology and evolution, 7(6):1898-1908, 2017. [journal]
A nonlinear mixed effects model of plant growth and estimation via stochastic variants of the EM algorithm. Baey, Trevezas, and Cournède. Communications in Statistics - Theory and Methods, 45(6):1643-1669, 2016. [journal][hal]
Parametrization of five classical plant growth models applied to sugar beet and comparison of their predictive capacities (on root yield and total biomass. Baey, Didier, Lemaire, Maupas, and Cournède. Ecological Modelling, 290:11-20, 2014. [journal][hal]
Development and Evaluation of Plant Growth Models: Methodology and Implementation in the PYGMALION platform. Cournède, Chen, Wu, Baey, and Bayol. Mathematical Modelling of Natural Phenomena, 8(4):112-130, 2013. [journal][hal]
Modelling the interindividual variability of organogenesis in sugar beet populations using a hierarchical segmented model. Baey, Didier, Lemaire, Maupas, and Cournède. Ecological Modelling, 263:56-63, 2013. [journal][hal]
Applications in medecine
Should adjuvant radiotherapy be administered in addition to front-line aggressive surgery (FAS) in patients with primary retroperitoneal sarcoma ? Le Péchoux, Musat, Baey, Mokhles, Terrier, Domont, Le Cesne, Laplanche, and Bonvalot. Annals of Oncology, 1-6, 2012.
Efficacy, safety, and biomarkers of single-agent bevacizumab therapy in patients with advanced hepatocellular carcinoma. Boige, Malka, Bourredjem, Dromain, Baey, Jacques, Pignon, Vimond, Bouvet-Forteau, and De Baere. The Oncologist, 17(8) :1063-1072, 2012.
Effect of chemotherapy in patients with resected small-cell or large-cell neuroendocrine carcinoma. Abedallaa, Tremblay, Baey, Fabre, Planchard, Pignon, Guigay, Le Pechoux, Soria, and de Montpreville. Journal of Thoracic Oncology, 7(7) :1179-1183, 2012.
Evaluation of heart murmurs in chinchillas (chinchilla lanigera) : 59 cases (1996 - 2009). Pignon, Sanchez-Migallon Guzman, Sinclair, Baey, Pignon, Maier, Kittleson, and Paul-Murphy. Journal of the American Veterinary Medical Association, 241(10) :1344-1347, 2012.
Meta-analysis of chemotherapy in head and neck cancer (MACH-NC) : A comprehensive analysis by tumour site. Blanchard, Baujat, Holostenco, Bourredjem, Baey, Bourhis, and Pignon. Radiotherapy and Oncology, 100(1) :33-40, 2011.
Mixed treatment comparison meta-analysis of altered fractionated radiotherapy and chemotherapy in head and neckcancer. Blanchard, Hill, Guihenneuc-Jouyaux, Baey, Bourhis, and Pignon. Journal of Clinical Epidemiology, 2011.
Docetaxel- and 5-FU-concurrent radiotherapy in patients presenting unresectable locally advanced pancreatic cancer : a FNCLCC-ACCORD/0201 randomized phase II trial’s pre-planned analysis and case report of a 5.5-year disease-free survival. Oberic, Viret, Baey, Ychou, Bennouna, Adenis, Peiffert, Mornex, Pignon, Celier, Berille, and Ducreux. Radiation Oncology, 6 :124, 2011.
Effect of a misspecification of response rates on type I and type II errors, in a phase II Simon design. Baey and Le Deley. European Journal of Cancer, 47(11):1647-1652, 2011.